PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39634.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 285aa    MW: 32464.6 Da    PI: 7.765
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39634.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.8e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l ++++ +G g W+  +++ g++R++k+c++rw++yl
       KHN39634.1 14 KGAWTALEDRILTEYINIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYL 61
                     79********************************************97 PP

2Myb_DNA-binding51.42.6e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+el+++++++lG++ W++Ia +++ gRt++++k++w++
       KHN39634.1  67 RGNITNDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                      7999******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.466961IPR017930Myb domain
SuperFamilySSF466894.97E-2812108IPR009057Homeodomain-like
SMARTSM007175.9E-131363IPR001005SANT/Myb domain
PfamPF002492.1E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-221568IPR009057Homeodomain-like
CDDcd001674.12E-91661No hitNo description
PROSITE profilePS5129423.89362116IPR017930Myb domain
SMARTSM007172.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.6E-1467110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-2469116IPR009057Homeodomain-like
CDDcd001677.22E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRSRCCSKE GLNKGAWTAL EDRILTEYIN IHGEGKWRHL PKRAGLKRCG KSCRLRWLNY  60
LRPGIKRGNI TNDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGRKLQNGG  120
AGTTLNTLQQ EDQNVKEQEW HYDKGSCLVQ TKATRWTKVT VTNEISQPNE GITIKSNVGD  180
NKMKGFLVSP SKESNNDSVL LDFMADFEMD GNFFSELLKM DLPESSCKEN KILGDNGNPS  240
TVDKVYLSPK SSCDTAHFPW GDSFYDTNFD FLPVTIFMES GFDWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359130.0AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548363.10.0PREDICTED: transcription factor TT2-like
SwissprotQ9FJA26e-60TT2_ARATH; Transcription factor TT2
TrEMBLA0A0B2S5R90.0A0A0B2S5R9_GLYSO; Transcription factor TT2
TrEMBLK7MEG80.0K7MEG8_SOYBN; Uncharacterized protein
STRINGGLYMA16G00931.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.14e-61MYB family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]